| drawLinePlot(Graphics2D, int, int, LineAttributes, int[][]) |  | 0% |  | 0% | 13 | 13 | 52 | 52 | 1 | 1 |
| defineOpts() |  | 0% |  | 0% | 9 | 9 | 72 | 72 | 1 | 1 |
| drawHeatMap(Graphics2D, int, LineAttributes, int, int[][], String, boolean) |  | 0% |  | 0% | 7 | 7 | 27 | 27 | 1 | 1 |
| addRecord(SAMRecord, int, String, boolean) |  | 0% |  | 0% | 14 | 14 | 27 | 27 | 1 | 1 |
| draw(Graphics2D, int, int, List) |  | 0% |  | 0% | 8 | 8 | 23 | 23 | 1 | 1 |
| init() |  | 0% |  | 0% | 6 | 6 | 17 | 17 | 1 | 1 |
| drawPlot(Graphics2D) |  | 0% |  | 0% | 7 | 7 | 15 | 15 | 1 | 1 |
| singleClick(boolean, int) |  | 0% |  | 0% | 8 | 8 | 15 | 15 | 1 | 1 |
| paintComponent(Graphics) |  | 0% |  | 0% | 3 | 3 | 9 | 9 | 1 | 1 |
| getLineAttributes(int) |  | 0% |  | 0% | 4 | 4 | 8 | 8 | 1 | 1 |
| getToolTipText(int) |  | 0% |  | 0% | 5 | 5 | 7 | 7 | 1 | 1 |
| useMaxCutOff() |  | 0% |  | 0% | 5 | 5 | 2 | 2 | 1 | 1 |
| addSeparator(GridBagConstraints, JPanel) |  | 0% | | n/a | 1 | 1 | 8 | 8 | 1 | 1 |
| adjustIdx(int, List) |  | 0% |  | 0% | 3 | 3 | 5 | 5 | 1 | 1 |
| isNegativeStrand(SAMRecord, boolean) |  | 0% |  | 0% | 4 | 4 | 6 | 6 | 1 | 1 |
| getMaxCoverage() |  | 0% |  | 0% | 2 | 2 | 1 | 1 | 1 | 1 |
| init(BamView, float, int, int) |  | 0% | | n/a | 1 | 1 | 5 | 5 | 1 | 1 |
| isRedraw() |  | 0% |  | 0% | 2 | 2 | 4 | 4 | 1 | 1 |
| hasSelectedBams() |  | 0% |  | 0% | 2 | 2 | 1 | 1 | 1 | 1 |
| showLabels(boolean) |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
| makeComposite(float) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| setPlotByStrand(boolean) |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
| setPlotHeatMap(boolean) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| isPlotHeatMap() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSelected() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| CoveragePanel() |  | 100% | | n/a | 0 | 1 | 0 | 12 | 0 | 1 |
| createMenus(JComponent) |  | 100% | | n/a | 0 | 1 | 0 | 7 | 0 | 1 |
| CoveragePanel(BamView) |  | 100% | | n/a | 0 | 1 | 0 | 6 | 0 | 1 |
| static {...} | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |