| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods |
| Total | 428 of 428 | 0% | 38 of 38 | 0% | 29 | 29 | 107 | 107 | 10 | 10 |
| readProcessStdout() | 0% | 0% | 9 | 9 | 37 | 37 | 1 | 1 | ||
| readProcessStderr() | 0% | 0% | 8 | 8 | 24 | 24 | 1 | 1 | ||
| RunSamTools(String[], String[], File, List) | 0% | n/a | 1 | 1 | 18 | 18 | 1 | 1 | ||
| waitFor() | 0% | 0% | 2 | 2 | 7 | 7 | 1 | 1 | ||
| getProcessStderr() | 0% | 0% | 2 | 2 | 6 | 6 | 1 | 1 | ||
| getProcessStdout() | 0% | 0% | 2 | 2 | 6 | 6 | 1 | 1 | ||
| waitForStdout() | 0% | 0% | 2 | 2 | 6 | 6 | 1 | 1 | ||
| getProcess() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getStatus() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getInitialIOError() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 |