| createIntronFeatures(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 18 | 18 | 69 | 69 | 1 | 1 |
| createIntergenicFeatures(JFrame, EntryGroup) |  | 0% |  | 0% | 21 | 21 | 80 | 80 | 1 | 1 |
| markAmbiguities() |  | 0% |  | 0% | 11 | 11 | 42 | 42 | 1 | 1 |
| createFeatureFromBaseRange(JFrame, Selection, EntryGroup, GotoEventSource) |  | 0% |  | 0% | 8 | 8 | 51 | 51 | 1 | 1 |
| markOpenReadingFrames(int, boolean, boolean, JFrame) |  | 0% |  | 0% | 5 | 5 | 41 | 41 | 1 | 1 |
| makeFeaturesFromPattern(BasePattern) |  | 0% |  | 0% | 7 | 7 | 36 | 36 | 1 | 1 |
| createFeatures(Vector, JFrame, String) |  | 0% |  | 0% | 3 | 3 | 36 | 36 | 1 | 1 |
| createGeneFeatures(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 6 | 6 | 41 | 41 | 1 | 1 |
| createExonFeatures(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 5 | 5 | 34 | 34 | 1 | 1 |
| makeNewFeature() |  | 0% |  | 0% | 4 | 4 | 24 | 24 | 1 | 1 |
| markOpenReadingFrames(Entry, MarkerRange, int, boolean, int, int) |  | 0% |  | 0% | 6 | 6 | 28 | 28 | 1 | 1 |
| union(Vector, Vector) |  | 0% |  | 0% | 11 | 11 | 19 | 19 | 1 | 1 |
| makeFeatureFromMarkerRange(Entry, MarkerRange, Key, QualifierVector) |  | 0% |  | 0% | 5 | 5 | 23 | 23 | 1 | 1 |
| markORFSWithSize(boolean, JFrame) |  | 0% |  | 0% | 3 | 3 | 21 | 21 | 1 | 1 |
| overlapsAnActiveSegment(Feature) |  | 0% |  | 0% | 7 | 7 | 25 | 25 | 1 | 1 |
| AddMenu(JFrame, Selection, EntryGroup, GotoEventSource, BasePlotGroup, AlignmentViewer, AlignmentViewer, String) |   | 89% |   | 50% | 7 | 8 | 7 | 62 | 0 | 1 |
| markOpenReadingFramesInRange() |  | 0% |  | 0% | 2 | 2 | 8 | 8 | 1 | 1 |
| makeFeaturesFromPattern() |  | 0% | | n/a | 1 | 1 | 4 | 4 | 1 | 1 |
| makeNewEntry() |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| getTotalRange(Feature) |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getGotoEventSource() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| AddMenu(JFrame, Selection, EntryGroup, GotoEventSource, BasePlotGroup, String) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
| static {...} |  | 100% | | n/a | 0 | 1 | 0 | 4 | 0 | 1 |
| AddMenu(JFrame, Selection, EntryGroup, GotoEventSource, BasePlotGroup) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |