| showLabels(Graphics2D) |  | 0% |  | 0% | 14 | 14 | 39 | 39 | 1 | 1 |
| drawVariantCall(Graphics2D, VCFRecord, int, int, int, int, float, FeatureVector, AbstractVCFReader, int) |  | 0% |  | 0% | 13 | 13 | 30 | 30 | 1 | 1 |
| main(String[]) |  | 0% |  | 0% | 15 | 15 | 40 | 40 | 1 | 1 |
| paintComponent(Graphics) |  | 0% |  | 0% | 14 | 14 | 36 | 36 | 1 | 1 |
| getToolTipText() |   | 3% |   | 10% | 5 | 6 | 18 | 20 | 0 | 1 |
| findVariantAtPoint(Point) |  | 0% |  | 0% | 11 | 11 | 27 | 27 | 1 | 1 |
| drawRegion(Graphics2D, String, int, int, int, int, int, float, FeatureVector) |  | 0% |  | 0% | 6 | 6 | 17 | 17 | 1 | 1 |
| drawScale(Graphics2D, int, int, float, int) |  | 0% |  | 0% | 9 | 9 | 21 | 21 | 1 | 1 |
| searchRegion(String, int, int, int, int, Point, FeatureVector, int, float) |  | 0% |  | 0% | 8 | 8 | 19 | 19 | 1 | 1 |
| drawTicks(Graphics2D, int, int, float, int, int) |  | 0% |  | 0% | 6 | 6 | 18 | 18 | 1 | 1 |
| getSequenceOffset(String) |   | 4% |   | 8% | 6 | 7 | 16 | 18 | 0 | 1 |
| highlightRange(MouseEvent, int) |  | 0% |  | 0% | 8 | 8 | 21 | 21 | 1 | 1 |
| isMouseOver(Point, VCFRecord, FeatureVector, int, int, int, int, float, AbstractVCFReader) |  | 0% |  | 0% | 8 | 8 | 15 | 15 | 1 | 1 |
| download(String, String) |  | 0% |  | 0% | 3 | 3 | 18 | 18 | 1 | 1 |
| readHeader(String, int) |   | 68% |   | 62% | 5 | 9 | 8 | 30 | 0 | 1 |
| drawSelectionRange(Graphics2D, float, int, int) |  | 0% |  | 0% | 5 | 5 | 12 | 12 | 1 | 1 |
| getCDSFeaturesInRange(int, int) |  | 0% |  | 0% | 4 | 4 | 14 | 14 | 1 | 1 |
| isOverlappingFeature(FeatureVector, int) |  | 0% |  | 0% | 7 | 7 | 9 | 9 | 1 | 1 |
| isOverlappingFeature(List, int) |  | 0% |  | 0% | 7 | 7 | 8 | 8 | 1 | 1 |
| getColourForSNP(VCFRecord, FeatureVector, int) |  | 0% |  | 0% | 7 | 7 | 11 | 11 | 1 | 1 |
| setGraphSize() |  | 0% |  | 0% | 2 | 2 | 8 | 8 | 1 | 1 |
| setAsStop(VCFRecord, FeatureVector, int, AbstractVCFReader) |  | 0% |  | 0% | 8 | 8 | 10 | 10 | 1 | 1 |
| setZoomLevel(int) |  | 0% |  | 0% | 2 | 2 | 9 | 9 | 1 | 1 |
| getQualityColour(VCFRecord) |  | 0% |  | 0% | 4 | 4 | 8 | 8 | 1 | 1 |
| getYPostion(int) |  | 0% |  | 0% | 5 | 5 | 7 | 7 | 1 | 1 |
| getVcfContainer() |  | 0% |  | 0% | 5 | 5 | 6 | 6 | 1 | 1 |
| createTopPanel(JFrame, EntryEdit) |   | 84% |   | 58% | 5 | 7 | 6 | 46 | 0 | 1 |
| VCFview(JFrame, JPanel, List, int, int, String, String, EntryEdit, FeatureDisplay) |   | 89% |   | 58% | 5 | 7 | 7 | 72 | 0 | 1 |
| getReference(String) |   | 55% |   | 50% | 3 | 4 | 7 | 22 | 0 | 1 |
| getVariantColour(String) |  | 0% |  | 0% | 5 | 5 | 9 | 9 | 1 | 1 |
| createMenus() |   | 94% |   | 80% | 2 | 6 | 5 | 94 | 0 | 1 |
| getScreenPosition(int, float, int, int) |  | 0% | | n/a | 1 | 1 | 4 | 4 | 1 | 1 |
| setDisplay() |   | 71% |   | 75% | 1 | 3 | 1 | 10 | 0 | 1 |
| handleCanvasMouseDrag(MouseEvent) |  | 0% |  | 0% | 3 | 3 | 8 | 8 | 1 | 1 |
| getImageIcon(Color) |   | 37% |   | 50% | 1 | 2 | 4 | 7 | 0 | 1 |
| testForURL(String, boolean) |   | 45% |   | 50% | 2 | 3 | 1 | 3 | 0 | 1 |
| makeColours(Color, int) |   | 87% |   | 62% | 3 | 5 | 3 | 17 | 0 | 1 |
| getBaseAtStartOfView() |  | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
| displayAdjustmentValueChanged(DisplayAdjustmentEvent) |  | 0% | | n/a | 1 | 1 | 4 | 4 | 1 | 1 |
| repaint() |   | 46% |   | 25% | 2 | 3 | 1 | 4 | 0 | 1 |
| makeComposite(float) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSelection() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getBasesInView() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getCombo() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| selectionChanged(SelectionChangeEvent) | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| addToViewMenu(int) |  | 100% | | n/a | 0 | 1 | 0 | 7 | 0 | 1 |
| static {...} |  | 100% | | n/a | 0 | 1 | 0 | 8 | 0 | 1 |
| showVariant(VCFRecord, FeatureVector, int, AbstractVCFReader, int, int) |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getLabel(int) |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getPixPerBaseByWidth() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getEntryGroup() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getChr() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| isConcatenate() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getVcfReaders() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |